Production of Hydrophobins from fungi

Hydrophobins (HPs) are industrially important surface active, amphipathic proteins produced by fungi. There are many applications reported for HPs in the literature notably as, agents for enhancing bioavailability of water insoluble drugs, food stabilizers, antifouling agents for biomedical devices like catheters, fusion partner for recombinant proteins for purification, low friction coatings on biomaterials, immobilizing enzymes in biosensors, etc. However, there are limitations for industrial scale production of HPs. Various methods have been reported for their production e.g. use of wild fungi from natural hydrophobic environments, use of modified bioreactors for submerged and solid state fermentation and recombinant homologous as well as heterologous microbes. Knowing the industrial importance of HPs many reviews have been published focusing on technical and medical applications of these proteins; however there is no comprehensive overview of HP production in the literature. This review summarizes the efforts made to improve yields of HPs by various bioprocesses and also highlights the strategies designed to overcome problems of low yield of HPs.     

The effects of concentrate energy source on feed intake and rumen fermentation parameters of dairy cows offered a range of grass silages

The effects of concentrate energy source on feed intake and rumen fermentation parameters of lactating dairy cattle, offered one of three grass silages differing in fermentation and intake characteristics, were evaluated in a partially balanced changeover design experiment involving four rumen fistulated dairy cows. Three silages were harvested using different management practices prior to and at ensiling. Silages A and C and silage B were harvested from primary or secondary regrowths either untreated or treated with a bacterial inoculant. For silages A, B and C, dry matter (DM) concentrations were 334, 197 and 183 g/kg (S.E. 3.1), pH values 4.00, 4.79 and 4.80 (S.E. 0.042) and ammonia nitrogen (N) concentrations were 123, 319 and 295 g/kg total N (S.E. 20.0), respectively. Two concentrates were formulated to contain similar crude protein, effective rumen degradable protein, digestible undegradable protein and metabolisable energy concentrations but using different carbohydrate sources to achieve a wide range of starch concentrations. For the low and high starch concentrates starch concentrations were 17 and 304 g/kg DM and acid detergent fibre concentrations were 170 and 80 g/kg DM, respectively. The silages were offered ad libitum, supplemented with 10 kg fresh concentrate daily. For silages A, B and C, DM intakes were 10.9, 7.2 and 8.6 kg/day and concentrate energy sources did not alter (P>0.05) intake. Increasing the level of starch in the concentrate decreased the molar concentration of acetate (P<0.05) and tended to increase the molar concentration of propionate (P<0.1). Silage type altered the molar concentration of acetate (P<0.01) and the acetate:propionate ratio (P<0.05). There were no silagetype×concentrate interactions (P>0.05) on silage intake or rumen fermentation parameters. It is concluded that when concentrate and silage form equal proportions of the diet, the composition of the silage has an over-riding influence on rumen fermentation parameters. Furthermore, the changes in milk fat concentration, observed in a concurrent production study, due to changes in silage and concentrate types can be accounted for by changes in the ratio of lipogenic to glucogenic precursors in the rumen fluid.     

Bird sensitivity to disturbance as an indicator of forest patch conditions: An issue in environmental assessments

An Environmental Assessment (EA) is one of the steps within the Environmental Impact Assessment process. Birds are often used in EA to help decision makers evaluate potential human impacts from proposed development activities. A “sensitivity to human disturbance” index, created by Parker III et al. (1996) for all Neotropical species, is commonly considered an ecological indicator. However, this parameter was created subjectively and, for most species, there have been no rigorous field test to validate its effectiveness as such. Therefore, in this study, we aim to: (1) evaluate if, at the local scale, birds from forest patches in a human-modified landscape (HML) may differ in sensitivity from Parker's sensitivity classification; (2) evaluate the effectiveness of the species richness value at each sensitivity level as an ecological indicator; (3) gather information on how often and in which manner Parker's classification has been used in EA. To do so, bird sampling was performed in eight forest patches in a HML over one year. Then, we created a local sensitivity to disturbance using information about threat, endemism, spatial distribution and relative abundance of all species in the study area. We found that 37% of the forest birds showed different local sensitivity levels when compared with Parker's classification. Our results show that only the richness of high-sensitivity species from our local classification fitted the ecological indicator assumptions helping the environmental conditions evaluation of the studied patches. We conclude that species richness of each Parker's bird sensitivity levels do not necessarily perform as an ecological indicator at the local scale, and particularly in HML. Nevertheless, Parker's Neotropical bird sensitivity classification was used in 50% of EA we reviewed. In these, 76% assumed that it was an accurate ecological indicator of the local forest conditions for birds. The lack of clear criteria used in Parker's classification allows diverse interpretations by ornithologists, and there is no agreement about the ecological meaning of each sensitivity level and what environmental conditions each level may indicate of. Therefore, the use of Parker's classification in EA may jeopardize accurate interpretations of proposed anthropogenic impacts. Furthermore, because a bird species’ sensitivity often varies between locations, we argue that Parker's generalized classification of bird sensitivity should not be used as an indicator of forest environmental conditions in EA throughout HMLs in Neotropics. Rather, local bird ecological indices should be explored, otherwise, erroneous predictions of the anthropogenic impacts will continue to be common.     

Assessing in situ dominance pattern of phytoplankton classes by dominance analysis as a proxy for realized niches

This study looks at two facets of dominant phytoplankton classes during phytoplankton succession. A detailed assessment of this issue is of special interest with regard to realized niches from a theoretical point of view but also for lake management as practical application.A realized niche mirrors the functional adaptability of an organism in a lake-specific constellation of environmental parameters. Therefore, the characterization of realized niches could be a key factor for management of problematic waters. Different strategies exist to control eutrophication and the risk of blooms by harmful algae. During the last decades, many restoration measures were initiated to manage eutrophicated inland lakes. In the past, it has become evident several times that restoration strategies do not necessarily lead to a reduction of biomass of undesirable cyanobacteria but can even promote their development.Due to this uncertainty of success and the high costs for remediation strategies, new prediction tools are required – ideally, based on routine monitoring data. Therefore, we developed a new method to extract potential optimal growth conditions (POGC) as indicators of realized niches for different phytoplankton taxa from existing data to improve existing strategies used in lake remediation and restoration.The analysis presented in this work is based on dominance pattern of different phytoplankton groups relative to environmental variables. Interpretation of these dominance patterns as indicators of POGC showed distinct pattern for several phytoplankton classes for all investigated objects. We identified low nitrogen and phosphate concentrations as favorable condition for cyanobacteria in Lake Auensee and Lake Feldberger Haussee. The reservoir Bleilochtalsperre showed a high N/P-concentration and cyanobacteria dominance was generally very low.     

Hydrological Forecasting in the Oder Estuary using a Three- Dimensional Hydrodynamic Model

A three-dimensional operational hydrodynamic model, developed at the Institute of Oceanography, University of Gdańsk was used to forecast hydrological conditions in the Oder Estuary. The model was based on the coastal ocean circulation model known as the Princeton Ocean Model (POM). Because of wind-driven water backup in the Oder mouth, a simplified operational model of river discharge, based on water budget in a stream channel, was developed. Linking these two models into a single system made it possible to forecast water levels, currents, water temperature, and salinity in the estuary. A good fit between the observed and computed data allowed to consider the model as a reliable environmental tool. Obtaining a hydrological forecast via a quick website access gives potential users an opportunity to predict the day-by-day course of processes that may affect different areas of human life and activities, e.g., navigation, port operations, flood protection of coastal areas; the predictions may also be used in studies of coastal processes in the estuary.     

Formation of metabolites during biodegradation of linear alkylbenzene sulfonate in an upflow anaerobic sludge bed reactor under thermophilic conditions.

Biodegradation of linear alkylbenzene sulfonate (LAS) was shown in an upflow anaerobic sludge blanket reactor under thermophilic conditions. The reactor was inoculated with granular biomass and fed with a synthetic medium and 3 micromol/L of a mixture of LAS with alkylchain length of 10 to 13 carbon atoms. The reactor was operated with a hydraulic retention time of 12 h with effluent recirculation in an effluent to influent ratio of 5 to 1. A sterile reactor operated in parallel revealed that sorption to sludge particles initially accounted for a major LAS removal. After 8 days of reactor operation, the removal of LAS in the reactor inoculated with active granular biomass exceeded the removal in the sterile reactor inoculated with sterile granular biomass. The effect of sorption ceased after 185 to 555 h depending on the LAS homologs. 40% of the LAS was biodegraded, and the removal rate was 0.5 x 10(-6) mol/h/mL granular biomass. Acidified effluent from the reactor was subjected to dichloromethane extraction followed by gas chromatography/mass spectrometry. Benzenesulfonic acid and benzaldehyde were detected in the reactor effluent from the reactor with active granular biomass but not in the sterile and unamended reactor effluent. Benzenesulfonic acid and benzaldehyde are the first identified degradation products in the anaerobic degradation of LAS.     

Arf-like proteins (Arl1 and Arl2) are involved in mitochondrial homeostasis in Mucor circinelloides

Mucor circinelloides is an opportunistic dimorphic pathogen, with the dimorphic process controlled in parts by fermentative and oxidative metabolisms, which lead to yeast or mycelial growth, respectively. Dimorphic transition is important for pathogenesis since the mycelium represents the virulent morphology. We previously reported that the deletion of arl1 or arl2 stimulate anaerobic germination in M. circinelloides, suggesting an augmented fermentative metabolism. In the present study, we demonstrate that the heterokaryon Δarl1⁽⁺⁾⁽⁻⁾ and homokaryon Δarl2 strains contain low number of mitochondria, which possibly results in a dysfunctional oxidative metabolism, marked by a low oxygen consumption in glucose and poor growth in glycerol as the unique carbon source. This dysfunction is compensated for by an increase in the glycolysis and fermentation in aerobic conditions, demonstrating growth kinetics similar to that in the wild-type strain. Moreover, as a consequence a high fermentative activity, the Δarl1⁽⁺⁾⁽⁻⁾ and Δarl2 strains possibly increased the yeast cell growth during low oxygen concentrations in presence of glucose.To the best of our knowledge, this is the first study to demonstrate the control of members of Arf family on the mitochondrial population in a Mucor species.     

Climate change and seasonal reproduction in mammals

Seasonal reproduction is common among mammals at all latitudes, even in the deep tropics. This paper (i) discusses the neuroendocrine pathways via which foraging conditions and predictive cues such as photoperiod enforce seasonality, (ii) considers the kinds of seasonal challenges mammals actually face in natural habitats, and (iii) uses the information thus generated to suggest how seasonal reproduction might be influenced by global climate change. Food availability and ambient temperature determine energy balance, and variation in energy balance is the ultimate cause of seasonal breeding in all mammals and the proximate cause in many. Photoperiodic cueing is common among long-lived mammals from the highest latitudes down to the mid-tropics. It is much less common in shorter lived mammals at all latitudes. An unknown predictive cue triggers reproduction in some desert and dry grassland species when it rains. The available information suggests that as our climate changes the small rodents of the world may adapt rather easily but the longer lived mammals whose reproduction is regulated by photoperiod may not do so well. A major gap in our knowledge concerns the tropics; that is where most species live and where we have the least understanding of how reproduction is regulated by environmental factors.     

Increased demand for NAD+ relative to ATP drives aerobic glycolysis

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